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» The Case for Grounding Databases
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BMCBI
2006
133views more  BMCBI 2006»
15 years 6 months ago
Web-based analysis of the mouse transcriptome using Genevestigator
Background: Gene function analysis often requires a complex and laborious sequence of laboratory and computer-based experiments. Choosing an effective experimental design generall...
Oliver Laule, Matthias Hirsch-Hoffmann, Tomas Hruz...
BMCBI
2005
97views more  BMCBI 2005»
15 years 6 months ago
Clustering the annotation space of proteins
Background: Current protein clustering methods rely on either sequence or functional similarities between proteins, thereby limiting inferences to one of these areas. Results: Her...
Victor Kunin, Christos A. Ouzounis
BMCBI
2005
292views more  BMCBI 2005»
15 years 6 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...
VLDB
2002
ACM
131views Database» more  VLDB 2002»
15 years 6 months ago
ProTDB: Probabilistic Data in XML
Whereas traditional databases manage only deterministic information, many applications that use databases involve uncertain data. This paper presents a Probabilistic Tree Data Bas...
Andrew Nierman, H. V. Jagadish
CORR
2010
Springer
139views Education» more  CORR 2010»
15 years 1 months ago
Data Cleaning and Query Answering with Matching Dependencies and Matching Functions
Matching dependencies were recently introduced as declarative rules for data cleaning and entity resolution. Enforcing a matching dependency on a database instance identifies the ...
Leopoldo E. Bertossi, Solmaz Kolahi, Laks V. S. La...