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BMCBI
2005
131views more  BMCBI 2005»
15 years 6 months ago
Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases
Background: Complex biological database systems have become key computational tools used daily by scientists and researchers. Many of these systems must be capable of executing on...
Marko Srdanovic, Ulf Schenk, Michael Schwieger, Fa...
BMCBI
2005
117views more  BMCBI 2005»
15 years 6 months ago
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA
Background: The Gene Ontology Annotation (GOA) database http://www.ebi.ac.uk/GOA aims to provide high-quality supplementary GO annotation to proteins in the UniProt Knowledgebase....
Evelyn Camon, Daniel Barrell, Emily Dimmer, Vivian...
ACL
2000
15 years 8 months ago
Specifying the Parameters of Centering Theory: a Corpus-Based Evaluation using Text from Application-Oriented Domains
The definitions of the basic concepts, rules, and constraints of centering theory involve underspecified notions such as `previous utterance', `realization', and `rankin...
Massimo Poesio, Hua Cheng, Renate Henschel, Janet ...
BMCBI
2007
104views more  BMCBI 2007»
15 years 6 months ago
Comparative evaluation of gene-set analysis methods
Background: Multiple data-analytic methods have been proposed for evaluating gene-expression levels in specific biological pathways, assessing differential expression associated w...
Qi Liu, Irina Dinu, Adeniyi J. Adewale, John D. Po...
BMCBI
2007
103views more  BMCBI 2007»
15 years 6 months ago
A comprehensive evaluation of SAM, the SAM R-package and a simple modification to improve its performance
Background: The Significance Analysis of Microarrays (SAM) is a popular method for detecting significantly expressed genes and controlling the false discovery rate (FDR). Recently...
Shunpu Zhang