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BMCBI
2006
112views more  BMCBI 2006»
15 years 6 months ago
Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins
Background: Hidden Markov Models (HMMs) have been extensively used in computational molecular biology, for modelling protein and nucleic acid sequences. In many applications, such...
Pantelis G. Bagos, Theodore D. Liakopoulos, Stavro...
BMCBI
2006
108views more  BMCBI 2006»
15 years 6 months ago
Gene function classification using Bayesian models with hierarchy-based priors
We investigate the application of hierarchical classification schemes to the annotation of gene function based on several characteristics of protein sequences including phylogenic ...
Babak Shahbaba, Radford M. Neal
CORR
2007
Springer
109views Education» more  CORR 2007»
15 years 6 months ago
Delayed Sequential Coding of Correlated Sources
— Motivated by video coding applications, we study the problem of sequential coding of correlated sources with (noncausal) encoding and/or decoding frame-delays. The fundamental ...
Nan Ma, Ye Wang, Prakash Ishwar
BMCBI
2005
173views more  BMCBI 2005»
15 years 6 months ago
Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis
Background: The large amount of completely sequenced genomes allows genomic context analysis to predict reliable functional associations between prokaryotic proteins. Major method...
François Enault, Karsten Suhre, Jean-Michel...
BMCBI
2004
265views more  BMCBI 2004»
15 years 6 months ago
ASAView: Database and tool for solvent accessibility representation in proteins
Background: Accessible surface area (ASA) or solvent accessibility of amino acids in a protein has important implications. Knowledge of surface residues helps in locating potentia...
Shandar Ahmad, M. Michael Gromiha, Hamed Fawareh, ...