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» Substring Selectivity Estimation
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DIS
2010
Springer
15 years 5 months ago
Sparse Substring Pattern Set Discovery Using Linear Programming Boosting
In this paper, we consider finding a small set of substring patterns which classifies the given documents well. We formulate the problem as 1 norm soft margin optimization problem ...
Kazuaki Kashihara, Kohei Hatano, Hideo Bannai, Mas...
200
Voted
CSB
2003
IEEE
16 years 17 days ago
Fast and Sensitive Probe Selection for DNA Chips Using Jumps in Matching Statistics
The design of large scale DNA microarrays is a challenging problem. So far, probe selection algorithms must trade the ability to cope with large scale problems for a loss of accur...
Sven Rahmann
MST
2006
149views more  MST 2006»
15 years 7 months ago
Parameterized Intractability of Distinguishing Substring Selection
A central question in computational biology is the design of genetic markers to distinguish between two given sets of (DNA) sequences. This question is formalized as the NP-comple...
Jens Gramm, Jiong Guo, Rolf Niedermeier
197
Voted
FCT
2003
Springer
16 years 14 days ago
On Exact and Approximation Algorithms for Distinguishing Substring Selection
Abstract. The NP-complete Distinguishing Substring Selection problem (DSSS for short) asks, given a set of “good” strings and a set of “bad” strings, for a solution string ...
Jens Gramm, Jiong Guo, Rolf Niedermeier
185
Voted
COMBINATORICS
2004
90views more  COMBINATORICS 2004»
15 years 7 months ago
Strings with Maximally Many Distinct Subsequences and Substrings
A natural problem in extremal combinatorics is to maximize the number of distinct subsequences for any length-n string over a finite alphabet ; this value grows exponentially, but...
Abraham Flaxman, Aram Wettroth Harrow, Gregory B. ...