Background: Translation initiation site (TIS) identification is an important aspect of the gene annotation process, requisite for the accurate delineation of protein sequences fro...
This work is part of the Fujaba project. The Fujaba project aims to use the Unified Modeling Language UML as a programmed graph rewriting language. This paper describes the new gr...
We present an algorithm to compute the cycle structure of large directed graphs where each node has exactly one outgoing edge. Such graphs appear as state diagrams of finite stat...
In view of the need to provide tools to facilitate the reuse of existing knowledge structures such as ontologies, we present in this paper a system, AKTiveRank, for the ranking of...
This paper presents a means of structuring specifications in real-time Object-Z: an integration of Object-Z with the timed refinement calculus. Incremental modification of classes ...