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SODA
2010
ACM
209views Algorithms» more  SODA 2010»
16 years 3 months ago
Counting Stars and Other Small Subgraphs in Sublinear Time
Detecting and counting the number of copies of certain subgraphs (also known as network motifs or graphlets), is motivated by applications in a variety of areas ranging from Biolo...
Mira Gonen, Dana Ron, Yuval Shavitt
ESWS
2009
Springer
15 years 4 months ago
Concept Search
Concept Search extends syntactic search, i.e., search based on the computation of string similarity between words, with semantic search, i.e., search based on the computation of s...
Fausto Giunchiglia, Uladzimir Kharkevich, Ilya Zai...
WABI
2001
Springer
142views Bioinformatics» more  WABI 2001»
15 years 10 months ago
Pattern Matching and Pattern Discovery Algorithms for Protein Topologies
We describe algorithms for pattern matching and pattern learning in TOPS diagrams (formal descriptions of protein topologies). These problems can be reduced to checking for subgrap...
Juris Viksna, David Gilbert
EDBT
2009
ACM
222views Database» more  EDBT 2009»
16 years 1 months ago
Data clouds: summarizing keyword search results over structured data
Keyword searches are attractive because they facilitate users searching structured databases. On the other hand, tag clouds are popular for navigation and visualization purposes o...
Georgia Koutrika, Zahra Mohammadi Zadeh, Hector Ga...
ISMB
2000
15 years 7 months ago
A Statistical Method for Finding Transcription Factor Binding Sites
Understanding the mechanismsthat determine the regulation of geneexpression is an important and challenging problem. A fundamental subproblem is to identify DNA-bindingsites for u...
Saurabh Sinha, Martin Tompa