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JCB
2006
215views more  JCB 2006»
15 years 6 months ago
Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs)
Protein fold recognition is an important step towards understanding protein three-dimensional structures and their functions. A conditional graphical model, i.e., segmentation con...
Yan Liu 0002, Jaime G. Carbonell, Peter Weigele, V...
NAR
2008
204views more  NAR 2008»
15 years 6 months ago
ppdb: a plant promoter database
ppdb (http://www.ppdb.gene.nagoya-u.ac.jp) is a plant promoter database that provides promoter annotation of Arabidopsis and rice. The database contains information on promoter st...
Yoshiharu Y. Yamamoto, Junichi Obokata
SIGMOD
2005
ACM
166views Database» more  SIGMOD 2005»
16 years 6 months ago
Substructure Similarity Search in Graph Databases
Advanced database systems face a great challenge raised by the emergence of massive, complex structural data in bioinformatics, chem-informatics, and many other applications. The ...
Xifeng Yan, Philip S. Yu, Jiawei Han
BMCBI
2007
143views more  BMCBI 2007»
15 years 6 months ago
An adaptive bin framework search method for a beta-sheet protein homopolymer model
Background: The problem of protein structure prediction consists of predicting the functional or native structure of a protein given its linear sequence of amino acids. This probl...
Alena Shmygelska, Holger H. Hoos
ICDE
2010
IEEE
209views Database» more  ICDE 2010»
15 years 11 months ago
Overlapping Community Search for social networks
— Finding decompositions of a graph into a family of clusters is crucial to understanding its underlying structure. While most existing approaches focus on partitioning the nodes...
Arnau Padrol-Sureda, Guillem Perarnau-Llobet, Juli...