Background: The functions of human cells are carried out by biomolecular networks, which include proteins, genes, and regulatory sites within DNA that encode and control protein e...
Background: Successful realization of a "systems biology" approach to analyzing cells is a grand challenge for our understanding of life. However, current modeling appro...
The declarative modeling language Alloy and its automatic analyzer provide an effective tool-set for building designs of systems and checking their properties. The Alloy Analyzer p...
Having in mind the large-scale analysis of gene regulatory networks, we review a graph decimation algorithm, called "leaf-removal", which can be used to evaluate the feed...
Preliminary work by the authors made use of the so-called "Manhattan world" assumption about the scene statistics of city and indoor scenes. This assumption stated that ...