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» Structured Relation Discovery using Generative Models
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BMCBI
2007
144views more  BMCBI 2007»
15 years 6 months ago
Accelerated search for biomolecular network models to interpret high-throughput experimental data
Background: The functions of human cells are carried out by biomolecular networks, which include proteins, genes, and regulatory sites within DNA that encode and control protein e...
Suman Datta, Bahrad A. Sokhansanj
BMCBI
2006
145views more  BMCBI 2006»
15 years 6 months ago
GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes
Background: Successful realization of a "systems biology" approach to analyzing cells is a grand challenge for our understanding of life. However, current modeling appro...
Kazuharu Arakawa, Yohei Yamada, Kosaku Shinoda, Yo...
FM
2008
Springer
152views Formal Methods» more  FM 2008»
15 years 8 months ago
Constraint Prioritization for Efficient Analysis of Declarative Models
The declarative modeling language Alloy and its automatic analyzer provide an effective tool-set for building designs of systems and checking their properties. The Alloy Analyzer p...
Engin Uzuncaova, Sarfraz Khurshid
CMSB
2006
Springer
15 years 10 months ago
Randomization and Feedback Properties of Directed Graphs Inspired by Gene Networks
Having in mind the large-scale analysis of gene regulatory networks, we review a graph decimation algorithm, called "leaf-removal", which can be used to evaluate the feed...
M. Cosentino Lagomarsino, P. Jona, B. Bassetti
NIPS
2000
15 years 8 months ago
The Manhattan World Assumption: Regularities in Scene Statistics which Enable Bayesian Inference
Preliminary work by the authors made use of the so-called "Manhattan world" assumption about the scene statistics of city and indoor scenes. This assumption stated that ...
James M. Coughlan, Alan L. Yuille