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JCB
2008
108views more  JCB 2008»
15 years 6 months ago
Asymptotics of RNA Shapes
Abstract. RNA shapes, introduced by Giegerich et al. (17), provide a useful classification of the branching complexity for RNA secondary structures. In this paper, we derive an exa...
W. A. Lorenz, Yann Ponty, Peter Clote
RECOMB
2006
Springer
16 years 7 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
JCDL
2011
ACM
221views Education» more  JCDL 2011»
14 years 9 months ago
Integrating implicit structure visualization with authoring promotes ideation
We need to harness the growing wealth of information in digital libraries to support intellectual work involving creative and exploratory processes. Prior research on hypertext au...
Andrew M. Webb, Andruid Kerne
FAC
2008
100views more  FAC 2008»
15 years 6 months ago
Slicing communicating automata specifications: polynomial algorithms for model reduction
Abstract. Slicing is a program analysis technique that was originally introduced to improve program debugging and understanding. The purpose of a slicing algorithm is to remove the...
Sébastien Labbé, Jean-Pierre Gallois
BMCBI
2004
144views more  BMCBI 2004»
15 years 6 months ago
PASBio: predicate-argument structures for event extraction in molecular biology
Background: The exploitation of information extraction (IE), a technology aiming to provide instances of structured representations from free-form text, has been rapidly growing w...
Tuangthong Wattarujeekrit, Parantu K. Shah, Nigel ...