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BMCBI
2007
113views more  BMCBI 2007»
15 years 6 months ago
Learning biophysically-motivated parameters for alpha helix prediction
Background: Our goal is to develop a state-of-the-art protein secondary structure predictor, with an intuitive and biophysically-motivated energy model. We treat structure predict...
Blaise Gassend, Charles W. O'Donnell, William Thie...
ISBRA
2007
Springer
16 years 13 days ago
Delta: A Toolset for the Structural Analysis of Biological Sequences on a 3D Triangular Lattice
Abstract. The lattice approach to biological structural analysis was made popular by the HP model for protein folding, but had not been used previously for RNA secondary structure ...
Minghui Jiang, Martin Mayne, Joel Gillespie
CANDC
2006
ACM
15 years 6 months ago
An RNA folding algorithm including pseudoknots based on dynamic weighted matching
On the basis of maximum weighted matching (MWM) algorithm, we introduced a dynamic weight related with stem length and used a recursive algorithm to predict RNA secondary structur...
Haijun Liu, Dong Xu, Jianlin Shao, Yifei Wang
ICML
2009
IEEE
16 years 7 months ago
Learning structural SVMs with latent variables
We present a large-margin formulation and algorithm for structured output prediction that allows the use of latent variables. Our proposal covers a large range of application prob...
Chun-Nam John Yu, Thorsten Joachims
WCE
2007
15 years 7 months ago
Numerical Simulation of Impacts involving a Collapsible Nonlinear Multilayer Structure
—A numerical model for the simulation of dynamic compression of a nonlinear multilayer structure subjected to transient compressive excitation is described and tested. It is show...
Michael A. Sek