– Protein structure prediction is one of the core research areas in bioinformatics. This paper addresses the protein secondary structure prediction problem for the twilight zone ...
Kanaka Durga Kedarisetti, Ke Chen, Aashima Kapoor,...
Abstract. In this contribution, a novel and robust, geometry-based grouping strategy is proposed. Repeated, planar patterns in special relative positions are detected. The grouping...
Andreas Turina, Tinne Tuytelaars, Theo Moons, Luc ...
Background: The majority of residues in protein structures are involved in the formation of helices and -strands. These distinctive secondary structure patterns can be used to rep...
Indraneel Majumdar, S. Sri Krishna, Nick V. Grishi...
Background: Because loops connect regular secondary structures, analysis of the former depends directly on the definition of the latter. The numerous assignment methods, however, ...
Laurent Fourrier, Cristina Benros, Alexandre G. de...
Recently, significant progress has been made on learning structured predictors via coordinated training algorithms such as conditional random fields and maximum margin Markov ne...