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CIBCB
2006
IEEE
16 years 10 days ago
Prediction of the Number of Helices for the Twilight Zone Proteins
– Protein structure prediction is one of the core research areas in bioinformatics. This paper addresses the protein secondary structure prediction problem for the twilight zone ...
Kanaka Durga Kedarisetti, Ke Chen, Aashima Kapoor,...
ICAPR
2001
Springer
15 years 10 months ago
Grouping via the Matching of Repeated Patterns
Abstract. In this contribution, a novel and robust, geometry-based grouping strategy is proposed. Repeated, planar patterns in special relative positions are detected. The grouping...
Andreas Turina, Tinne Tuytelaars, Theo Moons, Luc ...
BMCBI
2005
101views more  BMCBI 2005»
15 years 6 months ago
PALSSE: A program to delineate linear secondary structural elements from protein structures
Background: The majority of residues in protein structures are involved in the formation of helices and -strands. These distinctive secondary structure patterns can be used to rep...
Indraneel Majumdar, S. Sri Krishna, Nick V. Grishi...
BMCBI
2004
73views more  BMCBI 2004»
15 years 6 months ago
Use of a structural alphabet for analysis of short loops connecting repetitive structures
Background: Because loops connect regular secondary structures, analysis of the former depends directly on the definition of the latter. The numerous assignment methods, however, ...
Laurent Fourrier, Cristina Benros, Alexandre G. de...
IJCAI
2007
15 years 7 months ago
Simple Training of Dependency Parsers via Structured Boosting
Recently, significant progress has been made on learning structured predictors via coordinated training algorithms such as conditional random fields and maximum margin Markov ne...
Qin Iris Wang, Dekang Lin, Dale Schuurmans