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ACL
2006
15 years 7 months ago
Mildly Non-Projective Dependency Structures
We present parsing algorithms for various mildly non-projective dependency formalisms. In particular, algorithms are presented for: all well-nested structures of gap degree at mos...
Marco Kuhlmann, Joakim Nivre
CONCUR
2003
Springer
15 years 11 months ago
Bundle Event Structures and CCSP
We investigate which event structures can be denoted by means of closed CCS ∪ CSP expressions. Working up to isomorphism we find that • all denotable event structures are bund...
Rob J. van Glabbeek, Frits W. Vaandrager
BMCBI
2007
100views more  BMCBI 2007»
15 years 6 months ago
Discovering structural motifs using a structural alphabet: Application to magnesium-binding sites
Background: For many metalloproteins, sequence motifs characteristic of metal-binding sites have not been found or are so short that they would not be expected to be metal-specifi...
Minko Dudev, Carmay Lim
BMCBI
2008
87views more  BMCBI 2008»
15 years 6 months ago
Protein structure search and local structure characterization
Background: Structural similarities among proteins can provide valuable insight into their functional mechanisms and relationships. As the number of available three-dimensional (3...
Shih-Yen Ku, Yuh-Jyh Hu
CPM
2006
Springer
125views Combinatorics» more  CPM 2006»
15 years 10 months ago
Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures
Abstract. Protein structure analysis is one of the most important research issues in the post-genomic era, and faster and more accurate query data structures for such 3-D structure...
Tetsuo Shibuya