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BMCBI
2007
147views more  BMCBI 2007»
15 years 6 months ago
Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes
Background: Computational prediction methods are currently used to identify genes in prokaryote genomes. However, identification of the correct translation initiation sites remain...
Yuko Makita, Michiel J. L. de Hoon, Antoine Danchi...
BMCBI
2010
227views more  BMCBI 2010»
15 years 6 months ago
Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage
Background: HIV-1 targets human cells expressing both the CD4 receptor, which binds the viral envelope glycoprotein gp120, as well as either the CCR5 (R5) or CXCR4 (X4) co-recepto...
Majid Masso, Iosif I. Vaisman
JCC
2006
68views more  JCC 2006»
15 years 6 months ago
Explicit factorization of external coordinates in constrained statistical mechanics models
If a macromolecule is described by curvilinear coordinates or rigid constraints are imposed, the equilibrium probability density that must be sampled in Monte Carlo simulations in...
Pablo Echenique, Iván Calvo
NAACL
2010
15 years 4 months ago
The Best Lexical Metric for Phrase-Based Statistical MT System Optimization
Translation systems are generally trained to optimize BLEU, but many alternative metrics are available. We explore how optimizing toward various automatic evaluation metrics (BLEU...
Daniel Cer, Christopher D. Manning, Daniel Jurafsk...
PAMI
2006
117views more  PAMI 2006»
15 years 6 months ago
Metric Learning for Text Documents
High dimensional structured data such as text and images is often poorly understood and misrepresented in statistical modeling. The standard histogram representation suffers from ...
Guy Lebanon