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BMCBI
2010
155views more  BMCBI 2010»
15 years 3 months ago
BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation
Background: Models for the simulation of metabolic networks require the accurate prediction of enzyme function. Based on a genomic sequence, enzymatic functions of gene products a...
Constantin Bannert, A. Welfle, C. aus dem Spring, ...
EVOW
2010
Springer
16 years 1 months ago
Top-Down Induction of Phylogenetic Trees
We propose a novel distance based method for phylogenetic tree reconstruction. Our method is based on a conceptual clustering method that extends the well-known decision tree learn...
Celine Vens, Eduardo Costa, Hendrik Blockeel
BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
16 years 1 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
EWMF
2003
Springer
15 years 11 months ago
Mining Web Sites Using Wrapper Induction, Named Entities, and Post-processing
This paper presents a novel method for extracting information from collections of Web pages across different sites. Our method uses a standard wrapper induction algorithm and explo...
Georgios Sigletos, Georgios Paliouras, Constantine...
ECEASST
2008
95views more  ECEASST 2008»
15 years 6 months ago
Graph Transformations for the Resource Description Framework
: The Resource Description Framework (RDF) is a standard developed by the World Wide Web Consortium (W3C) to facilitate the representation and exchange of structured (meta-)data in...
Benjamin Braatz, Christoph Brandt