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CEC
2005
IEEE
16 years 12 days ago
A genetic algorithm for energy minimization in bio-molecular systems
Energy minimization algorithms for bio-molecular systems are critical to applications such as the prediction of protein folding. Conventional energy minimization methods such as th...
Xiaochun Weng, Lutz Hamel, Lenore M. Martin, Joan ...
OOPSLA
2000
Springer
15 years 10 months ago
Scalable propagation-based call graph construction algorithms
Propagation-based call graph construction algorithms have been studied intensively in the 1990s, and differ primarily in the number of sets that are used to approximate run-time v...
Frank Tip, Jens Palsberg
UAI
2003
15 years 8 months ago
Systematic vs. Non-systematic Algorithms for Solving the MPE Task
The paper explores the power of two systematic Branch and Bound search algorithms that exploit partition-based heuristics, BBBT (a new algorithm for which the heuristic informatio...
Radu Marinescu 0002, Kalev Kask, Rina Dechter
BIBE
2007
IEEE
138views Bioinformatics» more  BIBE 2007»
16 years 1 months ago
A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots
-We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a...
Xiang Chen, Simin He, Dongbo Bu, Runsheng Chen, We...
PDCAT
2007
Springer
16 years 27 days ago
Two Tree-Based Algorithms for Network Spare Capacity Design
Abstract. Survivable network design has become increasingly important due to the need for reliable communication service. Its main purpose is to provide cost-efficient spare capaci...
Hovhannes A. Harutyunyan, Calin D. Morosan, Yunzan...