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JCC
2006
82views more  JCC 2006»
15 years 6 months ago
Monte Carlo simulations of biomolecules: The MC module in CHARMM
: We describe the implementation of a general and flexible Monte Carlo (MC) module for the program CHARMM, which is used widely for modeling biomolecular systems with empirical ene...
Jie Hu, Ao Ma, Aaron R. Dinner
JSCIC
2008
124views more  JSCIC 2008»
15 years 6 months ago
Growth, Structure and Pattern Formation for Thin Films
Abstract An epitaxial thin film consists of layers of atoms whose lattice properties are determined by those of the underlying substrate. This paper reviews mathematical modeling, ...
Russel E. Caflisch
JEA
2006
83views more  JEA 2006»
15 years 6 months ago
Cache-Friendly implementations of transitive closure
In this paper we show cache-friendly implementations of the Floyd-Warshall algorithm for the All-Pairs ShortestPath problem. We first compare the best commercial compiler optimiza...
Michael Penner, Viktor K. Prasanna
JFP
2006
113views more  JFP 2006»
15 years 6 months ago
Efficient manipulation of binary data using pattern matching
Pattern matching is an important operation in functional programs. So far, pattern matching has been investigated in the context of structured terms. This article presents an appr...
Per Gustafsson, Konstantinos F. Sagonas
JFR
2006
88views more  JFR 2006»
15 years 6 months ago
Discovering natural kinds of robot sensory experiences in unstructured environments
We derive categories directly from robot sensor data to address the symbol grounding problem. Unlike model-based approaches where human intuitive correspondences are sought betwee...
Daniel H. Grollman, Odest Chadwicke Jenkins, Frank...
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