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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
16 years 1 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
BIBM
2008
IEEE
112views Bioinformatics» more  BIBM 2008»
16 years 1 months ago
Fast Alignments of Metabolic Networks
Network alignments are extensively used for comparing, exploring, and predicting biological networks. Existing alignment tools are mostly based on isomorphic and homeomorphic embe...
Qiong Cheng, Piotr Berman, Robert W. Harrison, Ale...
CDC
2008
IEEE
16 years 1 months ago
Convex duality and entropy-based moment closures: Characterizing degenerate densities
A common method for constructing a function from a finite set of moments is to solve a constrained minimization problem. The idea is to find, among all functions with the given ...
Cory D. Hauck, C. David Levermore, André L....
CDC
2008
IEEE
109views Control Systems» more  CDC 2008»
16 years 1 months ago
MPC for tracking with optimal closed-loop performance
— This paper deals with the tracking problem for constrained linear systems using a model predictive control (MPC) law. As it is well known, MPC provides a control law suitable f...
Antonio Ferramosca, Daniel Limón, Ignacio A...
CGO
2008
IEEE
16 years 1 months ago
Fast liveness checking for ssa-form programs
Liveness analysis is an important analysis in optimizing compilers. Liveness information is used in several optimizations and is mandatory during the code-generation phase. Two dr...
Benoit Boissinot, Sebastian Hack, Daniel Grund, Be...
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