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BMCBI
2008
154views more  BMCBI 2008»
15 years 7 months ago
GeNESiS: gene network evolution simulation software
Background: There has been a lot of interest in recent years focusing on the modeling and simulation of Gene Regulatory Networks (GRNs). However, the evolutionary mechanisms that ...
Anton Kratz, Masaru Tomita, Arun Krishnan
BMCBI
2005
250views more  BMCBI 2005»
15 years 6 months ago
FiatFlux - a software for metabolic flux analysis from 13C-glucose experiments
Background: Quantitative knowledge of intracellular fluxes is important for a comprehensive characterization of metabolic networks and their functional operation. In contrast to d...
Nicola Zamboni, Eliane Fischer, Uwe Sauer
204
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BMCBI
2010
108views more  BMCBI 2010»
15 years 6 months ago
iGTP: A software package for large-scale gene tree parsimony analysis
Background: The ever-increasing wealth of genomic sequence information provides an unprecedented opportunity for large-scale phylogenetic analysis. However, species phylogeny infe...
Ruchi Chaudhary, Mukul S. Bansal, André Weh...
189
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INFSOF
2010
100views more  INFSOF 2010»
15 years 5 months ago
Investigating the impact of a measurement program on software quality
Context: Measurement programs have been around for several decades but have been often misused or misunderstood by managers and developers. This misunderstanding prevented their a...
Houari A. Sahraoui, Lionel C. Briand, Yann-Gaë...
250
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ICWSM
2009
15 years 4 months ago
Gephi: An Open Source Software for Exploring and Manipulating Networks
Gephi is an open source software for graph and network analysis. It uses a 3D render engine to display large networks in real-time and to speed up the exploration. A flexible and ...
Mathieu Bastian, Sebastien Heymann, Mathieu Jacomy