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BMCBI
2007
105views more  BMCBI 2007»
15 years 6 months ago
Extended analysis of benchmark datasets for Agilent two-color microarrays
Background: As part of its broad and ambitious mission, the MicroArray Quality Control (MAQC) project reported the results of experiments using External RNA Controls (ERCs) on fiv...
Kathleen F. Kerr
BMCBI
2005
112views more  BMCBI 2005»
15 years 6 months ago
Vector analysis as a fast and easy method to compare gene expression responses between different experimental backgrounds
Background: Gene expression studies increasingly compare expression responses between different experimental backgrounds (genetic, physiological, or phylogenetic). By focusing on ...
Rainer Breitling, Patrick Armengaud, Anna Amtmann
JSS
2007
126views more  JSS 2007»
15 years 6 months ago
Fine-grain analysis of common coupling and its application to a Linux case study
Common coupling (sharing global variables across modules) is widely accepted as a measure of software quality and maintainability; a low level of common coupling is necessary (but...
Dror G. Feitelson, Tokunbo O. S. Adeshiyan, Daniel...
TCBB
2010
106views more  TCBB 2010»
15 years 1 months ago
Quantifying the Degree of Self-Nestedness of Trees: Application to the Structural Analysis of Plants
In this paper we are interested in the problem of approximating trees by trees with a particular self-nested structure. Self-nested trees are such that all their subtrees of a give...
Christophe Godin, Pascal Ferraro
BMCBI
2011
15 years 1 months ago
SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects
Background: High-throughput re-sequencing, new genotyping technologies and the availability of reference genomes allow the extensive characterization of Single Nucleotide Polymorp...
Alexis Dereeper, Stéphane Nicolas, Loic Le ...