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IPPS
2009
IEEE
16 years 1 months ago
Implementing protein seed-based comparison algorithm on the SGI RASC-100 platform
This paper describes a parallel FPGA implementation of a genomic sequence comparison algorithm for finding similarities between a large set of protein sequences and full genomes....
Van Hoa Nguyen, Alexandre Cornu, Dominique Lavenie...
JSC
2006
83views more  JSC 2006»
15 years 6 months ago
Phylogenetic invariants for stationary base composition
Changing base composition during the evolution of biological sequences can mislead some of the phylogenetic inference techniques in current use. However, detecting whether such a ...
Elizabeth S. Allman, John A. Rhodes
RECOMB
2007
Springer
16 years 6 months ago
Rearrangements in Genomes with Centromeres Part I: Translocations
A centromere is a special region in the chromosome that plays a vital role during cell division. Every new chromosome created by a genome rearrangement event must have a centromere...
Michal Ozery-Flato, Ron Shamir
EAAI
2008
111views more  EAAI 2008»
15 years 6 months ago
Fuzzy conditional temporal problems: Strong and weak consistency
: In real life scenarios there is often the need for modelling conditional plans where external events determgine the actual execution sequence. Conditional Temporal Problems (CTPs...
Marco Falda, Francesca Rossi, Kristen Brent Venabl...
JFP
2008
125views more  JFP 2008»
15 years 6 months ago
Types and trace effects of higher order programs
This paper shows how type effect systems can be combined with model-checking techniques to produce powerful, automatically verifiable program logics for higher order programs. The...
Christian Skalka, Scott F. Smith, David Van Horn