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» Sequences of Level 1, 2, 3, ..., k , ..
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CP
2003
Springer
15 years 11 months ago
A SAT-Based Approach to Multiple Sequence Alignment
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...
BMCBI
2010
153views more  BMCBI 2010»
15 years 6 months ago
VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences
Background: Understanding the community structure of microbes is typically accomplished by sequencing 16S ribosomal RNA (16S rRNA) genes. These community data can be represented b...
Hiroshi Mori, Fumito Maruyama, Ken Kurokawa
BMCBI
2008
121views more  BMCBI 2008»
15 years 6 months ago
BioSAVE: Display of scored annotation within a sequence context
Background: Visualization of sequence annotation is a common feature in many bioinformatics tools. For many applications it is desirable to restrict the display of such annotation...
Richard F. Pollock, Boris Adryan
BMCBI
2005
158views more  BMCBI 2005»
15 years 6 months ago
Automated generation of heuristics for biological sequence comparison
Background: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. ...
Guy St. C. Slater, Ewan Birney
ICDM
2009
IEEE
259views Data Mining» more  ICDM 2009»
15 years 4 months ago
Topic Modeling for Sequences of Temporal Activities
: Topic Modeling for Sequences of Temporal Activities Zhi-Yong Shen, Ping Luo, Yuhong Xiong, Jun Sun, Yi-Dong Shen HP Laboratories HPL-2010-160 topic modeling, LDA, sequence, temp...
Zhiyong Shen, Ping Luo, Yuhong Xiong, Jun Sun, Yi-...