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JCB
1998
84views more  JCB 1998»
15 years 6 months ago
Methods and Statistics for Combining Motif Match Scores
Position-speci c scoring matrices are useful for representing and searching for protein sequence motifs. A sequence family can often be described by a group of one or more motifs,...
Timothy L. Bailey, Michael Gribskov
TIT
1998
96views more  TIT 1998»
15 years 6 months ago
Sequential Prediction of Individual Sequences Under General Loss Functions
Abstract— We consider adaptive sequential prediction of arbitrary binary sequences when the performance is evaluated using a general loss function. The goal is to predict on each...
David Haussler, Jyrki Kivinen, Manfred K. Warmuth
HEURISTICS
2010
15 years 3 months ago
A shift sequence based approach for nurse scheduling and a new benchmark dataset
This paper investigates an adaptive constructive method for solving nurse rostering problems. The constraints considered in the problems are categorised into three classes: those t...
Peter Brucker, Edmund K. Burke, Timothy Curtois, R...
BMCBI
2008
164views more  BMCBI 2008»
15 years 6 months ago
Word correlation matrices for protein sequence analysis and remote homology detection
Background: Classification of protein sequences is a central problem in computational biology. Currently, among computational methods discriminative kernel-based approaches provid...
Thomas Lingner, Peter Meinicke
ICDE
2009
IEEE
155views Database» more  ICDE 2009»
16 years 8 months ago
Finding Time-Lagged 3D Clusters
Existing 3D clustering algorithms on gene ? sample ? time expression data do not consider the time lags between correlated gene expression patterns. Besides, they either ignore the...
Xin Xu, Ying Lu, Kian-Lee Tan, Anthony K. H. Tung