Background: Remote homology detection is a challenging problem in Bioinformatics. Arguably, profile Hidden Markov Models (pHMMs) are one of the most successful approaches in addre...
Background: Multiple sequence alignment algorithms are very important tools in molecular biology today. Accurate alignment of proteins is central to several areas such as homology...
Saikat Chakrabarti, Nitin Bhardwaj, Prem A. Anand,...
We explore the following problem: given a collection of creases on a piece of paper, each assigned a folding direction of mountain or valley, is there a flat folding by a sequenc...
Esther M. Arkin, Michael A. Bender, Erik D. Demain...
The online learning problem requires a player to iteratively choose an action in an unknown and changing environment. In the standard setting of this problem, the player has to ch...
We propose a simple variant of kd-trees, called rank-based kd-trees, for sets of points in Rd . We show that a rank-based kd-tree, like an ordinary kd-tree, supports range search ...
Mohammad Ali Abam, Mark de Berg, Bettina Speckmann