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BMCBI
2010
153views more  BMCBI 2010»
15 years 6 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
OTM
2007
Springer
16 years 16 days ago
Translating XPath Queries into SPARQL Queries
Abstract The W3C has developed XPath [3] as a query language for XML data. XPath is embedded in many other languages like XQuery and XSLT. The name of XPath derives from its basic ...
Matthias Droop, Markus Flarer, Jinghua Groppe, Sve...
ALMOB
2008
131views more  ALMOB 2008»
15 years 6 months ago
Fast algorithms for computing sequence distances by exhaustive substring composition
The increasing throughput of sequencing raises growing needs for methods of sequence analysis and comparison on a genomic scale, notably, in connection with phylogenetic tree reco...
Alberto Apostolico, Olgert Denas
BMCBI
2007
152views more  BMCBI 2007»
15 years 6 months ago
Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography
Background: Coalescent simulations have proven very useful in many population genetics studies. In order to arrive to meaningful conclusions, it is important that these simulation...
Miguel Arenas, David Posada
BMCBI
2007
117views more  BMCBI 2007»
15 years 6 months ago
Supervised multivariate analysis of sequence groups to identify specificity determining residues
Background: Proteins that evolve from a common ancestor can change functionality over time, and it is important to be able identify residues that cause this change. In this paper ...
Iain M. Wallace, Desmond G. Higgins