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» Sequence Comparison Using a Relational Database Approach
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BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
16 years 8 days ago
Highly Scalable and Accurate Seeds for Subsequence Alignment
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
Abhijit Pol, Tamer Kahveci
BMCBI
2008
86views more  BMCBI 2008»
15 years 6 months ago
Subfamily specific conservation profiles for proteins based on n-gram patterns
Background: A new algorithm has been developed for generating conservation profiles that reflect the evolutionary history of the subfamily associated with a query sequence. It is ...
John K. Vries, Xiong Liu
POPL
2011
ACM
14 years 9 months ago
Making prophecies with decision predicates
We describe a new algorithm for proving temporal properties expressed in LTL of infinite-state programs. Our approach takes advantage of the fact that LTL properties can often be...
Byron Cook, Eric Koskinen
VLDB
2002
ACM
129views Database» more  VLDB 2002»
15 years 6 months ago
Optimizing View Queries in ROLEX to Support Navigable Result Trees
An increasing number of applications use XML data published from relational databases. For speed and convenience, such applications routinely cache this XML data locally and acces...
Philip Bohannon, Sumit Ganguly, Henry F. Korth, P....
DAGM
2008
Springer
15 years 8 months ago
On Sparsity Maximization in Tomographic Particle Image Reconstruction
This work focuses on tomographic image reconstruction in experimental fluid mechanics (TomoPIV), a recently established 3D particle image velocimetry technique. Corresponding 2D im...
Stefania Petra, Andreas Schröder, Bernhard Wi...