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BMCBI
2006
87views more  BMCBI 2006»
15 years 6 months ago
XML schemas for common bioinformatic data types and their application in workflow systems
Background: Today, there is a growing need in bioinformatics to combine available software tools into chains, thus building complex applications from existing single-task tools. T...
Philipp N. Seibel, Jan Krüger, Sven Hartmeier...
BMCBI
2007
227views more  BMCBI 2007»
15 years 6 months ago
Growing functional modules from a seed protein via integration of protein interaction and gene expression data
Background: Nowadays modern biology aims at unravelling the strands of complex biological structures such as the protein-protein interaction (PPI) networks. A key concept in the o...
Ioannis A. Maraziotis, Konstantina Dimitrakopoulou...
JSS
2007
115views more  JSS 2007»
15 years 6 months ago
A case study in re-engineering to enforce architectural control flow and data sharing
Without rigorous software development and maintenance, software tends to lose its original architectural structure and become difficult to understand and modify. ArchJava, a recen...
Marwan Abi-Antoun, Jonathan Aldrich, Wesley Coelho
BMCBI
2008
175views more  BMCBI 2008»
15 years 6 months ago
Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
Background: Protein-protein interactions are ubiquitous and essential for all cellular processes. High-resolution X-ray crystallographic structures of protein complexes can reveal...
Andrew J. Bordner, Andrey A. Gorin
SIGCSE
2005
ACM
217views Education» more  SIGCSE 2005»
16 years 2 days ago
Alternatives to two classic data structures
Red-black trees and leftist heaps are classic data structures that are commonly taught in Data Structures (CS2) and/or Algorithms (CS7) courses. This paper describes alternatives ...
Chris Okasaki