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» Semantic Mining and Analysis of Gene Expression Data
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BMCBI
2002
99views more  BMCBI 2002»
15 years 6 months ago
FunSpec: a web-based cluster interpreter for yeast
Background: For effective exposition of biological information, especially with regard to analysis of large-scale data types, researchers need immediate access to multiple categor...
Mark D. Robinson, Jörg Grigull, Naveed Mohamm...
BMCBI
2008
76views more  BMCBI 2008»
15 years 6 months ago
Empirical Bayes analysis of single nucleotide polymorphisms
Background: An important goal of whole-genome studies concerned with single nucleotide polymorphisms (SNPs) is the identification of SNPs associated with a covariate of interest s...
Holger Schwender, Katja Ickstadt
BMCBI
2005
120views more  BMCBI 2005»
15 years 6 months ago
A microarray study of MPP+-treated PC12 Cells: Mechanisms of toxicity (MOT) analysis using bioinformatics tools
Background: This paper describes a microarray study including data quality control, data analysis and the analysis of the mechanism of toxicity (MOT) induced by 1-methyl-4-phenylp...
Zengjun Xu, Tucker A. Patterson, Jonathan D. Wren,...
ICDM
2008
IEEE
146views Data Mining» more  ICDM 2008»
16 years 1 months ago
Hunting for Coherent Co-clusters in High Dimensional and Noisy Datasets
Clustering problems often involve datasets where only a part of the data is relevant to the problem, e.g., in microarray data analysis only a subset of the genes show cohesive exp...
Meghana Deodhar, Joydeep Ghosh, Gunjan Gupta, Hyuk...
GCB
2005
Springer
98views Biometrics» more  GCB 2005»
16 years 2 days ago
Composite Module Analyst: A Fitness-Based Tool for Prediction of Transcription Regulation
: Functionally related genes involved in the same molecular-genetic, biochemical, or physiological process are often regulated coordinately Such regulation is provided by precisely...
Alexander E. Kel, Tatiana Konovalova, Tagir Valeev...