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BIBM
2008
IEEE
125views Bioinformatics» more  BIBM 2008»
15 years 6 months ago
Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic
This paper addresses the protein classification problem, and explores how its accuracy can be improved by using information from time-course gene expression data. The methods are ...
Antonina Mitrofanova, Samantha Kleinberg, Jane Car...
ADHOC
2010
195views more  ADHOC 2010»
15 years 6 months ago
SDRT: A reliable data transport protocol for underwater sensor networks
In this paper, we investigate the reliable data transport problem in underwater sensor networks. Underwater sensor networks are significantly different from terrestrial sensor net...
Peng Xie, Zhong Zhou, Zheng Peng, Jun-Hong Cui, Zh...
BMCBI
2008
122views more  BMCBI 2008»
15 years 6 months ago
Grammar-based distance in progressive multiple sequence alignment
Background: We propose a multiple sequence alignment (MSA) algorithm and compare the alignment-quality and execution-time of the proposed algorithm with that of existing algorithm...
David J. Russell, Hasan H. Otu, Khalid Sayood
BMCBI
2008
78views more  BMCBI 2008»
15 years 6 months ago
A new protein linear motif benchmark for multiple sequence alignment software
Background: Linear motifs (LMs) are abundant short regulatory sites used for modulating the functions of many eukaryotic proteins. They play important roles in post-translational ...
Emmanuel Perrodou, Claudia Chica, Olivier Poch, To...
ALMOB
2006
102views more  ALMOB 2006»
15 years 6 months ago
Mining, compressing and classifying with extensible motifs
Background: Motif patterns of maximal saturation emerged originally in contexts of pattern discovery in biomolecular sequences and have recently proven a valuable notion also in t...
Alberto Apostolico, Matteo Comin, Laxmi Parida
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