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BIBM
2010
IEEE
222views Bioinformatics» more  BIBM 2010»
15 years 4 months ago
CEO a cloud epistasis computing model in GWAS
The 1000 Genome project has made available a large number of single nucleotide polymorphisms (SNPs) for genome-wide association studies (GWAS). However, the large number of SNPs ha...
Zhengkui Wang, Yue Wang, Kian-Lee Tan, Limsoon Won...
CIKM
2010
Springer
15 years 4 months ago
Index structures for efficiently searching natural language text
Many existing indexes on text work at the document granularity and are not effective in answering the class of queries where the desired answer is only a term or a phrase. In this...
Pirooz Chubak, Davood Rafiei
IPPS
2010
IEEE
15 years 4 months ago
Overlapping computation and communication: Barrier algorithms and ConnectX-2 CORE-Direct capabilities
Abstract--This paper explores the computation and communication overlap capabilities enabled by the new CORE-Direct hardware capabilities introduced in the InfiniBand (IB) Host Cha...
Richard L. Graham, Stephen W. Poole, Pavel Shamis,...
IPPS
2010
IEEE
15 years 4 months ago
Parallelization of tau-leap coarse-grained Monte Carlo simulations on GPUs
The Coarse-Grained Monte Carlo (CGMC) method is a multi-scale stochastic mathematical and simulation framework for spatially distributed systems. CGMC simulations are important too...
Lifan Xu, Michela Taufer, Stuart Collins, Dionisio...
IPPS
2010
IEEE
15 years 4 months ago
Tile QR factorization with parallel panel processing for multicore architectures
To exploit the potential of multicore architectures, recent dense linear algebra libraries have used tile algorithms, which consist in scheduling a Directed Acyclic Graph (DAG) of...
Bilel Hadri, Hatem Ltaief, Emmanuel Agullo, Jack D...