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230
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AB
2008
Springer
16 years 1 months ago
An Algorithm for Qualitative Simulation of Gene Regulatory Networks with Steep Sigmoidal Response Functions
A specific class of ODEs has been shown to be adequate to describe the essential features of the complex dynamics of Gene-Regulatory Networks (GRN). But, the effective exploitatio...
Liliana Ironi, Luigi Panzeri, Erik Plahte
185
Voted
IMSCCS
2007
IEEE
16 years 1 months ago
Asymmetric Bagging and Feature Selection for Activities Prediction of Drug Molecules
Background: Activities of drug molecules can be predicted by QSAR (quantitative structure activity relationship) models, which overcomes the disadvantages of high cost and long cy...
Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. ...
IMSCCS
2007
IEEE
16 years 1 months ago
Evolutionary Conservation of DNA-Contact residues in DNA-binding Domains
Background: DNA-binding proteins are of utmost importance to gene regulation. The identification of DNA-binding domains is useful for understanding the regulation mechanisms of DN...
Yao-Lin Chang, Huai-Kuang Tsai, Cheng-Yan Kao, Yun...
207
Voted
IPPS
2007
IEEE
16 years 1 months ago
Nonuniformly Communicating Noncontiguous Data: A Case Study with PETSc and MPI
Due to the complexity associated with developing parallel applications, scientists and engineers rely on highlevel software libraries such as PETSc, ScaLAPACK and PESSL to ease th...
Pavan Balaji, Darius Buntinas, Satish Balay, Barry...
222
Voted
IPPS
2007
IEEE
16 years 1 months ago
Formal Analysis for Debugging and Performance Optimization of MPI
High-end computing is universally recognized to be a strategic tool for leadership in science and technology. A significant portion of high-end computing is conducted on clusters...
Ganesh Gopalakrishnan, Robert M. Kirby
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