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APIN
2006
136views more  APIN 2006»
15 years 6 months ago
Cell modeling with reusable agent-based formalisms
Biologists are building increasingly complex models and simulations of cells and other biological entities, and are looking at alternatives to traditional representations. Making ...
Ken Webb, Tony White
CORR
2006
Springer
120views Education» more  CORR 2006»
15 years 6 months ago
Termination orders for 3-dimensional rewriting
Abstract: This paper studies 3-polygraphs as a framework for rewriting on two-dimensional words. A translation of term rewriting systems into 3-polygraphs with explicit resource ma...
Yves Guiraud
ENTCS
2006
1305views more  ENTCS 2006»
15 years 6 months ago
Communication Attitudes: A Formal Approach to Ostensible Intentions, and Individual and Group Opinions
Conventional approaches to the modeling of autonomous agents and agent communication rely heavily on the ascription of mental properties like beliefs and intentions to the individ...
Matthias Nickles, Felix A. Fischer, Gerhard Wei&sz...
BMCBI
2007
202views more  BMCBI 2007»
15 years 6 months ago
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics
Background: Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim ...
Massimo Bernaschi, Filippo Castiglione, Alessandra...
BMCBI
2007
93views more  BMCBI 2007»
15 years 6 months ago
SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition
Background: Predicting a protein’s structural class from its amino acid sequence is a fundamental problem in computational biology. Much recent work has focused on developing ne...
Iain Melvin, Eugene Ie, Rui Kuang, Jason Weston, W...
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