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BMCBI
2007
233views more  BMCBI 2007»
15 years 6 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
MICRO
2008
IEEE
93views Hardware» more  MICRO 2008»
15 years 6 months ago
What Kinds of Computer-Software-Related Advances (if Any) Are Eligible for Patents? Part II: The "Useful Arts" Requirement
of nature, or abstract idea (collectively, a principle). The clue to the patent-eligibility of processes that do not involve substance-transformation is whether the process impleme...
Richard Stern
SIGMETRICS
2008
ACM
15 years 6 months ago
Ironmodel: robust performance models in the wild
Traditional performance models are too brittle to be relied on for continuous capacity planning and performance debugging in many computer systems. Simply put, a brittle model is ...
Eno Thereska, Gregory R. Ganger
SIGMETRICS
2008
ACM
138views Hardware» more  SIGMETRICS 2008»
15 years 6 months ago
Utility maximization in peer-to-peer systems
In this paper, we study the problem of utility maximization in P2P systems, in which aggregate application-specific utilities are maximized by running distributed algorithms on P2...
Minghua Chen, Miroslav Ponec, Sudipta Sengupta, Ji...
TC
2008
15 years 6 months ago
Cryptanalysis with COPACOBANA
Cryptanalysis of ciphers usually involves massive computations. The security parameters of cryptographic algorithms are commonly chosen so that attacks are infeasible with availabl...
Tim Güneysu, Timo Kasper, Martin Novotn&yacut...