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IPPS
2006
IEEE
16 years 17 days ago
Parallel implementation of a quartet-based algorithm for phylogenetic analysis
This paper describes a parallel implementation of our recently developed algorithm for phylogenetic analysis on the IBM BlueGene/L cluster [15]. This algorithm constructs evolutio...
Bing Bing Zhou, Daniel Chu, Monther Tarawneh, Ping...
CSB
2003
IEEE
150views Bioinformatics» more  CSB 2003»
15 years 12 months ago
Algorithms for Bounded-Error Correlation of High Dimensional Data in Microarray Experiments
The problem of clustering continuous valued data has been well studied in literature. Its application to microarray analysis relies on such algorithms as -means, dimensionality re...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
IJCAI
2007
15 years 8 months ago
MB-DPOP: A New Memory-Bounded Algorithm for Distributed Optimization
In distributed combinatorial optimization problems, dynamic programming algorithms like DPOP ([Petcu and Faltings, 2005]) require only a linear number of messages, thus generating...
Adrian Petcu, Boi Faltings
CORR
2002
Springer
123views Education» more  CORR 2002»
15 years 6 months ago
Survey propagation: an algorithm for satisfiability
: We study the satisfiability of randomly generated formulas formed by M clauses of exactly K literals over N Boolean variables. For a given value of N the problem is known to be m...
Alfredo Braunstein, Marc Mézard, Riccardo Z...
DATE
2009
IEEE
113views Hardware» more  DATE 2009»
16 years 1 months ago
Algorithms for the automatic extension of an instruction-set
Abstract—In this paper, two general algorithms for the automatic generation of instruction-set extensions are presented. The basic instruction set of a reconfigurable architectu...
Carlo Galuzzi, Dimitris Theodoropoulos, Roel Meeuw...