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PC
2006
124views Management» more  PC 2006»
15 years 5 months ago
Message-passing code generation for non-rectangular tiling transformations
Tiling is a well known loop transformation used to reduce communication overhead in distributed memory machines. Although a lot of theoretical research has been done concerning th...
Georgios I. Goumas, Nikolaos Drosinos, Maria Athan...
IPPS
2008
IEEE
16 years 11 days ago
Overcoming scaling challenges in biomolecular simulations across multiple platforms
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
BMCBI
2011
14 years 9 months ago
A user-friendly web portal for T-Coffee on supercomputers
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...
PODC
2011
ACM
14 years 8 months ago
Robust network supercomputing without centralized control
Internet supercomputing is becoming an increasingly popular means for harnessing the power of a vast number of interconnected computers. This comes at a cost substantially lower t...
Seda Davtyan, Kishori M. Konwar, Alexander A. Shva...
IPPS
2009
IEEE
16 years 19 days ago
Portable builds of HPC applications on diverse target platforms
—High-end machines at modern HPC centers are constantly undergoing hardware and system software upgrades – necessitating frequent rebuilds of application codes. The number of p...
Magdalena Slawiñska, Jaroslaw Slawinski, Va...