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BMCBI
2008
152views more  BMCBI 2008»
15 years 6 months ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...
214
Voted
IEEEPACT
2009
IEEE
15 years 4 months ago
Region Based Structure Layout Optimization by Selective Data Copying
As the gap between processor and memory continues to grow, memory performance becomes a key performance bottleneck for many applications. Compilers therefore increasingly seek to m...
Sandya S. Mannarswamy, Ramaswamy Govindarajan, Ris...
NAR
2010
194views more  NAR 2010»
15 years 1 months ago
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
Alternative splicing is an important mechanism for increasing protein diversity. However, its functional effects are largely unknown. Here, we present our new software workflow co...
Dorothea Emig, Nathan Salomonis, Jan Baumbach, Tho...
CC
2010
Springer
190views System Software» more  CC 2010»
16 years 1 months ago
Is Reuse Distance Applicable to Data Locality Analysis on Chip Multiprocessors?
On Chip Multiprocessors (CMP), it is common that multiple cores share certain levels of cache. The sharing increases the contention in cache and memory-to-chip bandwidth, further h...
Yunlian Jiang, Eddy Z. Zhang, Kai Tian, Xipeng She...
RTAS
1996
IEEE
15 years 11 months ago
Efficient worst case timing analysis of data caching
Recent progress in worst case timing analysis of programs has made it possible to perform accurate timing analysis of pipelined execution and instruction caching, which is necessa...
Sung-Kwan Kim, Sang Lyul Min, Rhan Ha