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BMCBI
2008
116views more  BMCBI 2008»
15 years 6 months ago
GBParsy: A GenBank flatfile parser library with high speed
Background: GenBank flatfile (GBF) format is one of the most popular sequence file formats because of its detailed sequence features and ease of readability. To use the data in th...
Tae-Ho Lee, Yeon-Ki Kim, Baek Hie Nahm
BMCBI
2008
163views more  BMCBI 2008»
15 years 6 months ago
ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein family
Background: Multiple sequence alignments are a fundamental tool for the comparative analysis of proteins and nucleic acids. However, large data sets are no longer manageable for v...
Alberto I. Roca, Albert E. Almada, Aaron C. Abajia...
BMCBI
2008
95views more  BMCBI 2008»
15 years 6 months ago
Universal seeds for cDNA-to-genome comparison
Background: To meet the needs of gene annotation for newly sequenced organisms, optimized spaced seeds can be implemented into cross-species sequence alignment programs to accurat...
Leming Zhou, Jonathan Stanton, Liliana Florea
CMPB
2010
374views more  CMPB 2010»
15 years 6 months ago
KARDIA: A Matlab software for the analysis of cardiac interbeat intervals
This article presents KARDIA, a Matlab (MathWorks Inc., MA) software developed for the analysis of cardiac interbeat interval (IBI) data. Available functions are called through a ...
Pandelis Perakakis, Mateus Joffily, Michael Taylor...
CMPB
2010
152views more  CMPB 2010»
15 years 6 months ago
Fast free-form deformation using graphics processing units
A large number of algorithms have been developed to perform non-rigid registration and it is a tool commonly used in medical image analysis. The FreeForm Deformation algorithm is ...
Marc Modat, Gerard R. Ridgway, Zeike A. Taylor, Ma...
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