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ICCSA
2004
Springer
16 years 11 days ago
A Sequence-Focused Parallelisation of EMBOSS on a Cluster of Workstations
Abstract. A number of individual bioinformatics applications (particularly BLAST and other sequence searching methods) have recently been implemented over clusters of workstations ...
Karl Podesta, Martin Crane, Heather J. Ruskin
IPPS
2003
IEEE
16 years 8 days ago
Sequence Alignment on the Cray MTA-2
The standard algorithm for alignment of DNA sequences using dynamic programming has been implemented on the Cray MTA-2 (Multithreaded Architecture-2) at ENRI (Electronic Navigatio...
Shahid H. Bokhari, Jon R. Sauer
IPPS
1999
IEEE
15 years 11 months ago
Large Scale Simulation of Parallel Molecular Dynamics
This paper aims to describe the implementation of TAKAKAW, an efficient parallel application for the simulation of molecular dynamics designed to handle large proteins in biology....
Pierre-Eric Bernard, Thierry Gautier, Denis Trystr...
COMPSAC
2001
IEEE
15 years 10 months ago
A Windows CE Implementation of a Middleware Architecture Supporting Time-Triggered Message-Triggered Objects
The time-triggered message-triggered object (TMO) programming scheme has been established to remove the limitation of conventional object programming techniques and tools in devel...
Galo Gimenez, K. H. Kim
PDCN
2004
15 years 8 months ago
CS_LITE: A lightweight computational steering system
Computational steering environments (CSEs) allow users to interact with applications executing in batch mode. Interaction with an application includes viewing intermediate results...
Silvia M. Figueira, Sonia Bui