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BMCBI
2007
141views more  BMCBI 2007»
15 years 6 months ago
Using structural motif descriptors for sequence-based binding site prediction
Background: Many protein sequences are still poorly annotated. Functional characterization of a protein is often improved by the identification of its interaction partners. Here, ...
Andreas Henschel, Christof Winter, Wan Kyu Kim, Mi...
IPPS
2009
IEEE
16 years 1 months ago
Accelerating HMMer on FPGAs using systolic array based architecture
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
Yanteng Sun, Peng Li, Guochang Gu, Yuan Wen, Yuan ...
ICML
2005
IEEE
16 years 7 months ago
Expectation maximization algorithms for conditional likelihoods
We introduce an expectation maximizationtype (EM) algorithm for maximum likelihood optimization of conditional densities. It is applicable to hidden variable models where the dist...
Jarkko Salojärvi, Kai Puolamäki, Samuel ...
ICDM
2006
IEEE
137views Data Mining» more  ICDM 2006»
16 years 11 days ago
Mining Complex Time-Series Data by Learning Markovian Models
In this paper, we propose a novel and general approach for time-series data mining. As an alternative to traditional ways of designing specific algorithm to mine certain kind of ...
Yi Wang, Lizhu Zhou, Jianhua Feng, Jianyong Wang, ...
WIDM
2004
ACM
15 years 11 months ago
Probabilistic models for focused web crawling
A Focused crawler must use information gleaned from previously crawled page sequences to estimate the relevance of a newly seen URL. Therefore, good performance depends on powerfu...
Hongyu Liu, Evangelos E. Milios, Jeannette Janssen