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BIBE
2005
IEEE
124views Bioinformatics» more  BIBE 2005»
16 years 13 days ago
Approximate Global Alignment of Sequences
We propose two novel dynamic programming (DP) methods that solve the the approximate bounded and unbounded global alignment problems for biological sequences. Our first method so...
Tamer Kahveci, Venkatakrishnan Ramaswamy, Han Tao,...
FOCS
1992
IEEE
15 years 11 months ago
Maximizing Non-Linear Concave Functions in Fixed Dimension
Consider a convex set P in IRd and a piecewise polynomial concave function F: P IR. Let A be an algorithm that given a point x IRd computes F(x) if x P, or returns a concave po...
Sivan Toledo
IEEESCC
2009
IEEE
15 years 4 months ago
Theoretical Framework for Eliminating Redundancy in Workflows
In this paper we look at combining and compressing a set of workflows, such that computation can be minimized. In this context, we look at two novel theoretical problems with appl...
Dhrubajyoti Saha, Abhishek Samanta, Smruti R. Sara...
TALG
2010
86views more  TALG 2010»
15 years 5 months ago
Approximating corridors and tours via restriction and relaxation techniques
Given a rectangular boundary partitioned into rectangles, the Minimum-Length Corridor (MLC-R) problem consists of finding a corridor of least total length. A corridor is a set of ...
Arturo Gonzalez-Gutierrez, Teofilo F. Gonzalez
DAC
2007
ACM
16 years 7 months ago
On Resolution Proofs for Combinational Equivalence
Modern combinational equivalence checking (CEC) engines are complicated programs which are difficult to verify. In this paper we show how a modern CEC engine can be modified to pr...
Satrajit Chatterjee, Alan Mishchenko, Robert K. Br...