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ISSPIT
2010
15 years 1 months ago
Accelerating the Nussinov RNA folding algorithm with CUDA/GPU
Graphics processing units (GPU) on commodity video cards have evolved into powerful computational devices. The RNA secondary structure arises from the primary structure and a backb...
Dar-Jen Chang, Christopher Kimmer, Ming Ouyang
OORASE
1999
Springer
15 years 11 months ago
OpenJava: A Class-Based Macro System for Java
This paper presents OpenJava, which is a macro system that we have developed for Java. With traditional macro systems designed for non object-oriented languages, it is difficult to...
Michiaki Tatsubori, Shigeru Chiba, Kozo Itano, Mar...
SIGARCH
2008
152views more  SIGARCH 2008»
15 years 6 months ago
OpenDF: a dataflow toolset for reconfigurable hardware and multicore systems
This paper presents the OpenDF framework and recalls that dataflow programming was once invented to address the problem of parallel computing. We discuss the problems with an impe...
Shuvra S. Bhattacharyya, Gordon J. Brebner, Jö...
ERLANG
2003
ACM
15 years 12 months ago
ARMISTICE: an experience developing management software with Erlang
In this paper, some experiences of using the concurrent functional language Erlang to implement a classical vertical application, a risk management information system, are present...
David Cabrero, Carlos Abalde, Carlos Varela, Laura...
WABI
2005
Springer
117views Bioinformatics» more  WABI 2005»
16 years 5 days ago
Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons
Multiple Sequence Alignment (MSA) is one of the most fundamental problems in computational molecular biology. The running time of the best known scheme for finding an optimal ali...
Pankaj K. Agarwal, Yonatan Bilu, Rachel Kolodny