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BMCBI
2011
14 years 10 months ago
Structator: fast index-based search for RNA sequence-structure patterns
Background: The secondary structure of RNA molecules is intimately related to their function and often more conserved than the sequence. Hence, the important task of searching dat...
Fernando Meyer, Stefan Kurtz, Rolf Backofen, Sebas...
VISUALIZATION
1998
IEEE
15 years 10 months ago
Interactive out-of-core isosurface extraction
In this paper, we present a novel out-of-core technique for the interactive computation of isosurfaces from volume data. Our algorithm minimizes the main memory and disk space req...
Yi-Jen Chiang, Cláudio T. Silva, William J....
ICDE
2004
IEEE
105views Database» more  ICDE 2004»
16 years 8 months ago
SPINE: Putting Backbone into String Indexing
The indexing technique commonly used for long strings, such as genomes, is the suffix tree, which is based on a vertical (intra-path) compaction of the underlying trie structure. ...
Naresh Neelapala, Romil Mittal, Jayant R. Haritsa
ICDE
2003
IEEE
149views Database» more  ICDE 2003»
16 years 8 months ago
Indexing Weighted-Sequences in Large Databases
We present an index structure for managing weightedsequences in large databases. A weighted-sequence is defined as a two-dimensional structure where each element in the sequence i...
Haixun Wang, Chang-Shing Perng, Wei Fan, Sanghyun ...
DAC
2003
ACM
16 years 7 months ago
A tool for describing and evaluating hierarchical real-time bus scheduling policies
We present a tool suite for building, simulating, and analyzing the results of hierarchical descriptions of the scheduling policy for modules sharing a bus in real-time applicatio...
Trevor Meyerowitz, Claudio Pinello, Alberto L. San...