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» Petri net modelling of biological networks
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BMCBI
2011
14 years 9 months ago
RegNetB: Predicting Relevant Regulator-Gene Relationships in Localized Prostate Tumor Samples
Background: A central question in cancer biology is what changes cause a healthy cell to form a tumor. Gene expression data could provide insight into this question, but it is dif...
Angel Alvarez, Peter J. Woolf
VVEIS
2007
15 years 7 months ago
UML-driven Information Systems and their Formal Integration Validation and Distribution
Being the de-facto standard (object-oriented-OO) method(-logy) for software-intensive systems development, UML with its different diagrams and supporting tools represent nowadays t...
Nasreddine Aoumeur, Gunter Saake
CLUSTER
2009
IEEE
16 years 25 days ago
Combining I/O operations for multiple array variables in parallel netCDF
—Parallel netCDF (PnetCDF) is a popular library used in many scientific applications to store scientific datasets. It provides high-performance parallel I/O while maintaining ...
Kui Gao, Wei-keng Liao, Alok N. Choudhary, Robert ...
BIBE
2007
IEEE
149views Bioinformatics» more  BIBE 2007»
15 years 10 months ago
XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes
Multi-state molecules and multi-component complexes are commonly involved in cellular signaling. Accounting for molecules that have multiple potential states, such as a protein tha...
Michael L. Blinov, Ion I. Moraru
ACSD
2003
IEEE
151views Hardware» more  ACSD 2003»
15 years 11 months ago
Communicating Transaction Processes
Message Sequence Charts (MSC) have been traditionally used to depict execution scenarios in the early stages of design cycle. MSCs portray inter-process ( inter-object) interactio...
Abhik Roychoudhury, P. S. Thiagarajan