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CCE
2008
15 years 7 months ago
Informative gene selection and design of regulatory networks using integer optimization
A central problem in bioinformatics and systems biology is the selection of appropriate models in a rational and systematic way. This fundamentally combinatorial problem can be re...
Eric Yang, Timothy Maguire, Martin L. Yarmush, Ioa...
ENTCS
2008
70views more  ENTCS 2008»
15 years 7 months ago
Spatial Differentiation and Positive Circuits in a Discrete Framework
Abstract. The biologist R. Thomas has enounced a rule relating multistationnarity in a system of genes interacting in a single cell to the existence of a positive circuit in the re...
Anne Crumière, Paul Ruet
JLP
2008
123views more  JLP 2008»
15 years 6 months ago
Communicating by compatibility
A bio-inspired language is presented. Its terms are processes enclosed into boxes with typed interaction sites. The main feature of the formalism lays in the fact that the key-loc...
Davide Prandi, Corrado Priami, Paola Quaglia
TCS
2008
15 years 6 months ago
On the decidability and complexity of the structural congruence for beta-binders
Beta-binders is a recent process calculus developed for modelling and simulating biological systems. As usual for process calculi, the semantic definition heavily relies on a stru...
Alessandro Romanel, Corrado Priami
ENVSOFT
2008
105views more  ENVSOFT 2008»
15 years 6 months ago
Software tools for pre- and post-processing of oceanic regional simulations
ROMSTOOLS, a collection of global data sets and a series of Matlab programs collected in an integrated toolbox, generates the grid, surface forcing, initial condition, open bounda...
Pierrick Penven, Patrick Marchesiello, Laurent Deb...