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BIOCOMP
2006
15 years 7 months ago
Performance of Sequence Alignment Bioinformatics Applications on General Purpose Processors: A Case Study
- Aligning specific sequences against other known sequences in a database is a central aspect of bioinformatics. New experimental data being added continuously to these databases n...
Pradeep Nair, Eugene John
ICPP
2009
IEEE
15 years 3 months ago
Using Subfiling to Improve Programming Flexibility and Performance of Parallel Shared-file I/O
There are two popular parallel I/O programming styles used by modern scientific computational applications: unique-file and shared-file. Unique-file I/O usually gives satisfactory ...
Kui Gao, Wei-keng Liao, Arifa Nisar, Alok N. Choud...
IPPS
2007
IEEE
16 years 15 days ago
Scheduling Issues in Optimistic Parallelization
Irregular applications, which rely on pointer-based data structures, are often difficult to parallelize. The inputdependent nature of their execution means that traditional paral...
Milind Kulkarni, Keshav Pingali
ISCA
1995
IEEE
93views Hardware» more  ISCA 1995»
15 years 9 months ago
Optimizing Memory System Performance for Communication in Parallel Computers
Communicationin aparallel systemfrequently involvesmoving data from the memory of one node to the memory of another; this is the standard communication model employedin message pa...
Thomas Stricker, Thomas R. Gross
DSD
2008
IEEE
165views Hardware» more  DSD 2008»
16 years 20 days ago
Application Analysis for Parallel Processing
Effective mapping of multimedia applications on massively parallel embedded systems is a challenging demand in the domain of compiler design. The software implementations of emerg...
Muhammad Rashid, Damien Picard, Bernard Pottier