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PPSC
1997
15 years 8 months ago
High-Performance Object-Oriented Scientific Programming in Fortran 90
We illustrate how Fortran 90 supports object-oriented concepts by example of plasma particle computations on the IBM SP. Our experience shows that Fortran 90 and object-oriented m...
Charles D. Norton, Viktor K. Decyk, Boleslaw K. Sz...
BMCBI
2010
122views more  BMCBI 2010»
15 years 6 months ago
Fast and accurate protein substructure searching with simulated annealing and GPUs
Background: Searching a database of protein structures for matches to a query structure, or occurrences of a structural motif, is an important task in structural biology and bioin...
Alex Stivala, Peter J. Stuckey, Anthony Wirth
ICS
2009
Tsinghua U.
16 years 1 months ago
Dynamic topology aware load balancing algorithms for molecular dynamics applications
Molecular Dynamics applications enhance our understanding of biological phenomena through bio-molecular simulations. Large-scale parallelization of MD simulations is challenging b...
Abhinav Bhatele, Laxmikant V. Kalé, Sameer ...
HPDC
1997
IEEE
15 years 10 months ago
Supporting Parallel Applications on Clusters of Workstations: The Intelligent Network Interface Approach
This paper presents a novel networking architecture designed for communication intensive parallel applications running on clusters of workstations (COWs) connected by highspeed ne...
Marcel-Catalin Rosu, Karsten Schwan, Richard Fujim...
IJCNN
2006
IEEE
16 years 19 days ago
Event modeling of message interchange in stochastic neural ensembles
— We propose a modeling framework based on the event-driven paradigm for populations of neurons which interchange messages. Unlike other strategies our approach is focused on the...
Vicenç Gómez, Andreas Kaltenbrunner,...