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CSB
2003
IEEE
152views Bioinformatics» more  CSB 2003»
15 years 11 months ago
A Parallel Genetic Algorithm for Physical Mapping of Chromosomes
Physical map reconstruction in the presence of errors is a central problem in genetics of high computational complexity. A parallel genetic algorithm for a maximum likelihood esti...
Suchendra M. Bhandarkar, Jinling Huang, Jonathan A...
IPPS
2003
IEEE
15 years 11 months ago
Parallel Tabu Search in a Heterogeneous Environment
In this paper, we discuss a parallel tabu search algorithm with implementation in a heterogeneous environment. Two parallelization strategies are integrated: functional decomposit...
Ahmad A. Al-Yamani, Sadiq M. Sait, Hassan Barada, ...
IPPS
2003
IEEE
15 years 11 months ago
Parallel Detection of Regulatory Elements with gMP
The detection of regulatory elements from a large set of regulatory regions is a challenging problem in computational genomics. However, computational methods to extract this biol...
Bertil Schmidt, Lin Feng, Amey V. Laud, Yusdi Sant...
PPOPP
2003
ACM
15 years 11 months ago
Factorization with morton-ordered quadtree matrices for memory re-use and parallelism
Quadtree matrices using Morton-order storage provide natural blocking on every level of a memory hierarchy. Writing the natural recursive algorithms to take advantage of this bloc...
Jeremy D. Frens, David S. Wise
GCC
2003
Springer
15 years 11 months ago
Coarse-Grained Distributed Parallel Programming Interface for Grid Computing
Abstract. In this paper, a practical coarse-grained distributed parallel programming interface for grid computing (PI4GC) is introduced. des a group of generic and abstract functio...
Yongwei Wu, Qing Wang, Guangwen Yang, Weimin Zheng