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179
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BMCBI
2010
189views more  BMCBI 2010»
15 years 6 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
CCGRID
2010
IEEE
15 years 4 months ago
Low-Cost Tuning of Two-Step Algorithms for Scheduling Mixed-Parallel Applications onto Homogeneous Clusters
Due to the strong increase of processing units available to the end user, expressing parallelism of an algorithm is a major challenge for many researchers. Parallel applications ar...
Sascha Hunold
VIS
2005
IEEE
297views Visualization» more  VIS 2005»
16 years 7 months ago
OpenGL Multipipe SDK: A Toolkit for Scalable Parallel Rendering
We describe OpenGL Multipipe SDK (MPK), a toolkit for scalable parallel rendering based on OpenGL. MPK provides a uniform application programming interface (API) to manage scalabl...
Praveen Bhaniramka, Philippe C. D. Robert, Stefan ...
HPDC
2007
IEEE
16 years 1 months ago
A fast topology inference: a building block for network-aware parallel processing
Adapting to the network is the key to achieving high performance for communication-intensive applications, including scientific computing, data intensive computing, and multicast...
Tatsuya Shirai, Hideo Saito, Kenjiro Taura
177
Voted
SIGMETRICS
2010
ACM
187views Hardware» more  SIGMETRICS 2010»
15 years 11 months ago
Can multipath mitigate power law delays?: effects of parallelism on tail performance
—Parallelism has often been used to improve the reliability and efficiency of a variety of different engineering systems. In this paper, we quantify the efficiency of paralleli...
Jian Tan, Wei Wei, Bo Jiang, Ness Shroff, Donald F...