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SAC
2009
ACM
16 years 1 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
IEEEPACT
2009
IEEE
16 years 1 months ago
Flextream: Adaptive Compilation of Streaming Applications for Heterogeneous Architectures
Increasing demand for performance and efficiency has driven the computer industry toward multicore systems. These systems have become the industry standard in almost all segments...
Amir Hormati, Yoonseo Choi, Manjunath Kudlur, Rodr...
IPPS
2007
IEEE
16 years 28 days ago
Nonuniformly Communicating Noncontiguous Data: A Case Study with PETSc and MPI
Due to the complexity associated with developing parallel applications, scientists and engineers rely on highlevel software libraries such as PETSc, ScaLAPACK and PESSL to ease th...
Pavan Balaji, Darius Buntinas, Satish Balay, Barry...
IPPS
2006
IEEE
16 years 20 days ago
Compiler assisted dynamic management of registers for network processors
Modern network processors support high levels of parallelism in packet processing by supporting multiple threads that execute on a micro-engine. Threads switch context upon encoun...
R. Collins, Fernando Alegre, Xiaotong Zhuang, Sant...
HPDC
2005
IEEE
16 years 7 days ago
Genetic algorithm based automatic data partitioning scheme for HPF
good data partitioning scheme is the need of the time. However it is very diflcult to arrive at a good solution as the number of possible dutupartitionsfor a given real lifeprogra...
Sunil Kumar Anand, Y. N. Srikant