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IPPS
2009
IEEE
16 years 1 months ago
Evaluating the use of GPUs in liver image segmentation and HMMER database searches
In this paper we present the results of parallelizing two life sciences applications, Markov random fieldsbased (MRF) liver segmentation and HMMER’s Viterbi algorithm, using GP...
John Paul Walters, Vidyananth Balu, Suryaprakash K...
IPPS
2009
IEEE
16 years 1 months ago
Designing multi-leader-based Allgather algorithms for multi-core clusters
The increasing demand for computational cycles is being met by the use of multi-core processors. Having large number of cores per node necessitates multi-core aware designs to ext...
Krishna Chaitanya Kandalla, Hari Subramoni, Gopala...
IPPS
2009
IEEE
16 years 1 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...
PDCAT
2009
Springer
16 years 1 months ago
A Speculative Technique for Auto-Memoization Processor with Multithreading
—We have proposed an auto-memoization processor. This processor automatically and dynamically memoizes both functions and loop iterations, and skips their execution by reusing th...
Yushi Kamiya, Tomoaki Tsumura, Hiroshi Matsuo, Yas...
ICASSP
2008
IEEE
16 years 1 months ago
Address assignment sensitive variable partitioning and scheduling for DSPS with multiple memory banks
Multiple memory banks design is employed in many high performance DSP processors. This architectural feature supports higher memory bandwidth by allowing multiple data memory acce...
Chun Jason Xue, Tiantian Liu, Zili Shao, Jingtong ...