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BMCBI
2011
14 years 10 months ago
Efficient alignment of pyrosequencing reads for re-sequencing applications
Background: Over the past few years, new massively parallel DNA sequencing technologies have emerged. These platforms generate massive amounts of data per run, greatly reducing th...
Francisco Fernandes, Paulo G. S. da Fonseca, Lu&ia...
BMCBI
2011
14 years 10 months ago
SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
Background: The popularity of massively parallel exome and transcriptome sequencing projects demands new data mining tools with a comprehensive set of features to support a wide r...
Xutao Deng
SIGMOD
2011
ACM
210views Database» more  SIGMOD 2011»
14 years 9 months ago
A platform for scalable one-pass analytics using MapReduce
Today’s one-pass analytics applications tend to be data-intensive in nature and require the ability to process high volumes of data efficiently. MapReduce is a popular programm...
Boduo Li, Edward Mazur, Yanlei Diao, Andrew McGreg...
SDM
2012
SIAM
297views Data Mining» more  SDM 2012»
13 years 9 months ago
A Flexible Open-Source Toolbox for Scalable Complex Graph Analysis
The Knowledge Discovery Toolbox (KDT) enables domain experts to perform complex analyses of huge datasets on supercomputers using a high-level language without grappling with the ...
Adam Lugowski, David M. Alber, Aydin Buluç,...
SPAA
2009
ACM
16 years 7 months ago
Dynamic external hashing: the limit of buffering
Hash tables are one of the most fundamental data structures in computer science, in both theory and practice. They are especially useful in external memory, where their query perf...
Zhewei Wei, Ke Yi, Qin Zhang
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